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ADB

The table below summarizes and links to bioinformatics resources that were developed, in whole or in part, by the NIAID-supported Pathogen Functional Genomics Resource Center at the J. Craig Venter Institute.

Project Description

Reagents and Resources

Katsura: KEGG Pathway Coverage and Expression Analysis

Katsura: KEGG Pathway Coverage and Expression Analysis

Tutorial and Guide to Microarray Data Analysis: Image Analysis, Normalization and Data Mining

Microarray Data Analysis Tutorial (2MB)

Microarray Data Analysis Tutorial w/Data Archive (58MB)

Magnolia: Microarray Data Management and Export System for PFGRC Microarrays

Magnolia Application and Source Code

Ginkgo: CGH and Expression Microarray Statistical Analysis and Normalization Platform

Ginkgo Application and Source Code

APEX Quantitative Proteomics Tool

APEX-QPT Application and Source Code

TM4: Comprehensive Microarray Software Suite for Data Management and Analysis

TM4 Suite, including the MADAM, Spotfinder, MIDAS and MeV Applications, Sample Datasets and Source Code

LEM (Linear Expression Maps): Visualizing Gene Expression on a Chromosomal Coordinate Map

LEM Module, implemented in the MeV Application (TM4 Suite) and Source Code

NonpaR: Four Nonparametric Statistical Tests for Common Microarray Experimental Designs

NonpaR Module, implemented in the MeV Application (TM4 Suite) and Source Code

EASE: Resources for Biological Role Analysis of Gene Lists

EASE Filesystems for PFGRC Microarrays (including CMR cellular roles, GO terms and PFAM annotations)

Cycas, version 1.0: A RT-PCR data normalization, annotation and statistical tool

Cycas